Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0111PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase. (299 aa)    
Predicted Functional Partners:
Daci_0110
PFAM: UspA domain protein; KEGG: ajs:Ajs_0074 UspA domain protein.
       0.722
Daci_0856
PFAM: protein of unknown function DUF1289; KEGG: vei:Veis_2838 protein of unknown function DUF1289.
  
     0.694
Daci_0112
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family.
       0.632
Daci_5690
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_3522 general secretion pathway protein H.
  
     0.603
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
  
     0.569
Daci_6039
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aav:Aave_4771 peptidase M20.
  
     0.527
Daci_5694
PFAM: General secretion pathway L; KEGG: aav:Aave_0920 hypothetical protein.
  
     0.522
Daci_0793
TIGRFAM: CitB domain protein; KEGG: ajs:Ajs_4071 CitB domain protein.
 
     0.515
Daci_5007
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ajs:Ajs_1184 hypothetical protein.
  
     0.501
Daci_5005
PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein.
  
     0.491
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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