STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0125TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_4322 transcriptional regulator, fis family. (594 aa)    
Predicted Functional Partners:
Daci_0128
PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_4325 secretion protein HlyD family protein.
 
 
 0.880
Daci_0126
PFAM: protein of unknown function DUF214; KEGG: aav:Aave_4323 protein of unknown function DUF214.
  
  
 0.781
Daci_0127
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4324 ABC transporter-related protein.
   
 
 0.777
Daci_0131
KEGG: aav:Aave_4328 hypothetical protein.
     
 0.739
Daci_0129
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: aav:Aave_4326 2,3-diketo-5-methylthio-1-phosphopentane phosphatase.
       0.732
Daci_0130
PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_4327 alpha/beta hydrolase fold.
       0.732
Daci_0501
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_2887 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.712
Daci_3367
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_2836 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.692
Daci_5858
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3125 multidrug efflux RND membrane fusion protein MexC; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.692
Daci_0163
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bch:Bcen2424_4746 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.680
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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