STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0138TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpn:KPN_03087 outer membrane porin, receptor for ferric enterobactin and colicins B and D. (810 aa)    
Predicted Functional Partners:
Daci_3773
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_4255 TonB family protein.
 
 
 0.704
Daci_4622
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_3311 TonB family protein.
 
 
 0.700
Daci_5812
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ajs:Ajs_2406 TonB family protein.
 
 
 0.696
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
  
 
 0.648
Daci_2126
KEGG: ajs:Ajs_1124 hypothetical protein.
  
 
 0.648
Daci_2461
Protein TolA; TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: aav:Aave_2225 TonB family protein.
  
 
 0.648
Daci_3738
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_5169 iron-regulated outer membrane virulence protein.
 
  
 0.583
Daci_5068
PFAM: Haemin-degrading family protein; KEGG: mfa:Mfla_1604 haemin-degrading.
 
  
 0.577
Daci_1104
KEGG: ajs:Ajs_0430 hypothetical protein.
  
  
 0.572
Daci_0135
KEGG: aav:Aave_4331 hypothetical protein.
       0.567
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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