Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_0140KEGG: xcb:XC_1336 hypothetical protein. (269 aa)    
Predicted Functional Partners:
Daci_5056
KEGG: mpt:Mpe_A3729 hypothetical protein.
 
  
 0.918
Daci_0139
KEGG: ccr:CC_2193 hypothetical protein.
 
     0.893
Daci_5057
PFAM: PepSY-associated TM helix domain protein; KEGG: mpt:Mpe_A3730 hypothetical protein.
 
   
 0.836
Daci_5054
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.732
Daci_5053
Flavodoxin/nitric oxide synthase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: har:HEAR3398 oxidoreductase binding flavins likely to be involved in sulfur metabolism (CysJ: sulfite reductase alpha subunit).
 
     0.728
Daci_1525
KEGG: aav:Aave_1925 putative iron-regulated protein.
   
    0.702
Daci_4743
PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein, family 1.
   
    0.700
Daci_0530
Flavodoxin/nitric oxide synthase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: aav:Aave_4788 flavodoxin/nitric oxide synthase.
 
    0.660
Daci_4459
KEGG: ccr:CC_1520 hypothetical protein.
  
     0.579
Daci_4460
KEGG: xom:XOO_0574 hypothetical protein.
  
     0.559
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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