Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0144Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A0487 transcriptional regulator, LysR-family. (296 aa)    
Predicted Functional Partners:
Daci_0548
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_6218 transcriptional regulator, LysR family.
  
     0.742
Daci_3769
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A2910 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.733
Daci_3032
PFAM: protein of unknown function DUF1028; KEGG: bxe:Bxe_A3464 hypothetical protein.
  
     0.704
Daci_0803
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1219 LysR-family transcriptional regulator.
  
     0.701
Daci_1982
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0865 transcriptional regulator, LysR-family.
  
     0.699
Daci_3031
PFAM: Endoribonuclease L-PSP; KEGG: pap:PSPA7_6178 hypothetical protein.
  
     0.698
Daci_3030
KEGG: pap:PSPA7_6179 hypothetical protein.
  
     0.695
Daci_3510
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3047 transcriptional regulator, LysR family.
  
     0.687
Daci_0188
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_4850 transcriptional regulator, LysR family.
  
     0.686
Daci_5634
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_3226 transcriptional regulator, LysR family.
  
     0.682
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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