STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0145KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system. (324 aa)    
Predicted Functional Partners:
Daci_0146
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component.
 
  
 0.959
Daci_0147
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1045 ABC transporter related.
 
  
 0.949
Daci_1140
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1091 binding-protein-dependent transport systems inner membrane component.
 
  
 0.760
Daci_0148
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: aav:Aave_2966 transcriptional regulator, histidine utilization repressor, GntR family.
  
    0.743
Daci_4637
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3042 binding-protein-dependent transport systems inner membrane component.
 
  
 0.722
Daci_1139
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1092 ABC transporter-related protein.
 
  
 0.708
Daci_5618
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1867 ABC-type sulfonate transporter, permease component.
 
  
 0.672
Daci_2376
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2146 nitrate ABC transporter, inner membrane subunit.
 
  
 0.600
Daci_4527
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4514 binding-protein-dependent transport systems inner membrane component.
 
  
 0.581
Daci_5619
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2221 ABC transporter-related protein.
 
  
 0.564
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.