STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (577 aa)    
Predicted Functional Partners:
hutH
KEGG: aav:Aave_2965 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
 0.999
hutI
KEGG: aav:Aave_2961 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.
 
 
 0.999
Daci_0155
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: vei:Veis_3649 formiminoglutamate deiminase.
 
  
 0.935
Daci_0151
PFAM: protein of unknown function DUF886; KEGG: aav:Aave_2962 protein of unknown function DUF886.
 
  
 0.921
Daci_0148
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: aav:Aave_2966 transcriptional regulator, histidine utilization repressor, GntR family.
 
  
 0.904
Daci_0156
PFAM: N-formylglutamate amidohydrolase; KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase.
 
  
 0.898
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; KEGG: gox:GOX1171 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.714
Daci_0153
PFAM: FAD linked oxidase domain protein; KEGG: bxe:Bxe_B1817 putative oxidoreductase.
       0.669
Daci_1440
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: vei:Veis_4599 transcriptional regulator, fis family.
 
  
 0.507
Daci_0146
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component.
       0.479
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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