STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0156PFAM: N-formylglutamate amidohydrolase; KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase. (287 aa)    
Predicted Functional Partners:
Daci_0155
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: vei:Veis_3649 formiminoglutamate deiminase.
 
 
 0.995
hutI
KEGG: aav:Aave_2961 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.
 
  
 0.965
Daci_5471
PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase.
  
  
 
0.925
Daci_0880
PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_3995 N-formylglutamate amidohydrolase.
  
  
 
0.923
Daci_0151
PFAM: protein of unknown function DUF886; KEGG: aav:Aave_2962 protein of unknown function DUF886.
 
    0.916
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.898
hutH
KEGG: aav:Aave_2965 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
  
 0.832
Daci_5941
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.812
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.809
Daci_0071
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4736 aspartate racemase.
    
  0.805
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.