STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0160PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: hch:HCH_03958 retron-type reverse transcriptase. (658 aa)    
Predicted Functional Partners:
Daci_0161
PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 protein containing SWIM zinc finger domain.
 
     0.874
Daci_0162
Hypothetical protein; KEGG: hch:HCH_03961 probable DNA binding protein containing WGR domain.
 
     0.861
Daci_4218
KEGG: rso:RSc3291 hypothetical protein.
   
 
 0.801
Daci_4558
KEGG: bur:Bcep18194_A4864 metal-dependent phosphohydrolase.
  
     0.752
kptA
Phosphate acetyltransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
  
     0.619
Daci_4559
KEGG: pfl:PFL_3007 homolog of eukaryotic DNA ligase III.
  
     0.560
Daci_5759
KEGG: bbt:BBta_5115 hypothetical protein.
  
     0.513
Daci_5758
PFAM: band 7 protein; KEGG: bbt:BBta_5114 hypothetical protein.
  
     0.510
Daci_0700
KEGG: mxa:MXAN_4169 hypothetical protein.
  
     0.501
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
  
 0.456
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.