STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0186PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0126 AMP-dependent synthetase and ligase. (503 aa)    
Predicted Functional Partners:
Daci_2771
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_1080 AMP-dependent synthetase and ligase.
  
  
 
0.922
Daci_0333
PFAM: Aldehyde Dehydrogenase; KEGG: pla:Plav_1859 aldehyde dehydrogenase.
  
 0.909
Daci_3753
KEGG: ajs:Ajs_2040 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
    
 0.909
Daci_4882
PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
  
 0.909
Daci_2109
KEGG: ajs:Ajs_1115 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; OHCU decarboxylase; PFAM: peptidase M20; peptidase dimerisation domain protein.
   
 
  0.801
Daci_2865
KEGG: aav:Aave_0970 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein.
   
 
  0.801
Daci_4353
Amidase, hydantoinase/carbamoylase family; KEGG: bbr:BB2432 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
   
 
  0.801
Daci_6028
KEGG: aav:Aave_4755 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
   
 
  0.801
Daci_0187
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0125 uncharacterized protein UPF0065.
       0.746
Daci_4755
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
 
 0.737
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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