STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0200PFAM: MmgE/PrpD family protein; KEGG: ajs:Ajs_0116 MmgE/PrpD family protein. (454 aa)    
Predicted Functional Partners:
Daci_0197
KEGG: ajs:Ajs_0119 hypothetical protein.
 
  
 0.881
Daci_0202
PFAM: HpcH/HpaI aldolase; KEGG: ajs:Ajs_0114 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.799
Daci_0199
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
    0.797
Daci_0198
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B1367 acyl-CoA dehydrogenase.
 
    0.777
Daci_3579
KEGG: ajs:Ajs_1632 PEP phosphonomutase.
 
  
 0.633
Daci_0799
KEGG: rme:Rmet_5380 hypothetical protein.
 
  
 0.624
Daci_4222
KEGG: bxe:Bxe_B0568 hypothetical protein.
  
  
 0.561
Daci_3511
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: vei:Veis_3048 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.544
Daci_0196
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0120 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.536
Daci_0201
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0115 uncharacterized protein UPF0065.
  
    0.527
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.