STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0206Hypothetical protein; KEGG: stm:STM0283 putative inner membrane protein. (136 aa)    
Predicted Functional Partners:
Daci_3845
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_1472 OmpA/MotB domain protein.
  
    0.686
Daci_0205
KEGG: aav:Aave_1934 hypothetical protein.
       0.671
Daci_0207
PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0100 uncharacterized domain 1.
       0.651
Daci_0208
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0099 uncharacterized protein UPF0065.
       0.651
Daci_0209
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase.
       0.651
Daci_0210
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0097 uncharacterized protein UPF0065.
       0.577
Daci_4514
YD repeat protein; KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein.
  
 
 0.432
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.