Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_0207PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0100 uncharacterized domain 1. (160 aa)    
Predicted Functional Partners:
Daci_0209
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase.
 
     0.815
Daci_0208
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0099 uncharacterized protein UPF0065.
       0.781
Daci_0175
PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0131 uncharacterized domain 1.
  
     0.710
Daci_0210
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0097 uncharacterized protein UPF0065.
       0.691
Daci_0206
Hypothetical protein; KEGG: stm:STM0283 putative inner membrane protein.
       0.651
Daci_0205
KEGG: aav:Aave_1934 hypothetical protein.
       0.569
Daci_1900
PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_1696 phenylacetic acid degradation-related protein.
  
     0.466
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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