STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0222TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A3589 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (396 aa)    
Predicted Functional Partners:
Daci_0221
TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A3588 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
Daci_0224
KEGG: mpt:Mpe_A3591 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.996
Daci_0223
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: mpt:Mpe_A3590 branched-chain amino acid ABC transporter, ATP-binding protein.
 
 0.995
Daci_0220
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: mpt:Mpe_A3587 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
 
 0.991
Daci_3638
KEGG: vei:Veis_4902 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.
 
  
 0.871
Daci_0226
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: mpt:Mpe_A3593 regulatory protein, putative.
 
     0.869
Daci_0225
Formamidase; PFAM: Acetamidase/Formamidase; KEGG: bxe:Bxe_B1706 formamidase (FmdA).
 
   
 0.832
Daci_0219
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0563 periplasmic sensor hybrid histidine kinase.
 
     0.816
Daci_0218
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pol:Bpro_0562 two component transcriptional regulator, LuxR family.
 
     0.784
Daci_0180
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pol:Bpro_0570 regulatory protein, putative.
 
     0.769
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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