Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_0258PFAM: ribonuclease BN; KEGG: aav:Aave_0221 ribonuclease BN. (331 aa)    
Predicted Functional Partners:
Daci_0257
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_1999 gluconolactonase.
 
  
 0.720
Daci_5865
PFAM: conserved hypothetical protein; KEGG: aav:Aave_1446 hypothetical protein.
 
    0.572
Daci_0259
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3911 transcriptional regulator, LysR family.
       0.570
Daci_0256
KEGG: ajs:Ajs_1998 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
       0.540
Daci_4339
TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: ajs:Ajs_2523 DNA ligase (ATP).
 
    0.529
Daci_4343
KEGG: aav:Aave_1492 putative DNA topoisomerase, type I.
 
    0.516
Daci_4773
PFAM: arsenate reductase and related; KEGG: ajs:Ajs_2740 arsenate reductase and related; Belongs to the ArsC family.
  
  
 0.449
Daci_3382
Putative phytochrome sensor protein; PFAM: protein of unknown function UPF0118; GAF domain protein; KEGG: ajs:Ajs_1892 putative GAF sensor protein.
 
    0.442
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
 
    0.431
Daci_4911
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: aav:Aave_2633 MATE efflux family protein.
     
 0.422
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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