STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0267PFAM: regulatory protein IclR; KEGG: reh:H16_A2948 transcriptional regulator, IclR-family. (268 aa)    
Predicted Functional Partners:
Daci_5727
PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: reh:H16_B1758 allophanate hydrolase.
  
    0.824
Daci_1602
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein.
  
     0.768
Daci_0043
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein.
  
     0.761
Daci_2968
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_4515 transcriptional regulator, IclR family.
  
     0.751
Daci_1993
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B3754 regulatory protein, IclR.
  
     0.743
Daci_0268
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase.
  
    0.634
Daci_0581
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_4674 putative transcriptional regulatory protein.
  
     0.604
Daci_0689
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B5276 regulatory protein, IclR.
  
     0.581
Daci_0266
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1763 gluconate 5-dehydrogenase.
  
    0.500
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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