Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Daci_0271KEGG: pfo:Pfl_0928 hypothetical protein. (93 aa)    
Predicted Functional Partners:
Daci_0273
KEGG: rpc:RPC_2857 hypothetical protein.
  
    0.907
Daci_0272
PFAM: PepSY-associated TM helix domain protein; KEGG: rpb:RPB_3524 PepSY-associated TM helix.
  
    0.828
Daci_3279
KEGG: rsh:Rsph17029_3599 hypothetical protein.
  
    0.609
Daci_2341
KEGG: bbr:BB3605 putative iron uptake protein.
  
    0.585
Daci_0274
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_4138 transcriptional regulator, LysR family.
       0.481
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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