STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0273KEGG: rpc:RPC_2857 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Daci_0272
PFAM: PepSY-associated TM helix domain protein; KEGG: rpb:RPB_3524 PepSY-associated TM helix.
 
    0.951
Daci_0271
KEGG: pfo:Pfl_0928 hypothetical protein.
  
    0.891
Daci_2342
KEGG: bbr:BB4741 putative iron-regulated membrane protein.
 
    0.790
Daci_3280
PFAM: PepSY-associated TM helix domain protein; KEGG: neu:NE1084 hypothetical protein.
 
    0.787
Daci_3281
KEGG: neu:NE1083 hypothetical protein.
  
    0.683
Daci_3884
KEGG: rpb:RPB_3526 hypothetical protein.
 
     0.661
Daci_3075
PFAM: PepSY-associated TM helix domain protein; KEGG: reh:H16_B1677 iron regulated protein.
 
    0.592
Daci_0530
Flavodoxin/nitric oxide synthase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: aav:Aave_4788 flavodoxin/nitric oxide synthase.
 
    0.586
Daci_4973
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid-like protein; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor.
 
    0.543
Daci_4751
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor.
 
    0.488
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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