STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0280PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: mms:mma_1602 transporter of the MFS superfamily. (395 aa)    
Predicted Functional Partners:
Daci_5283
PFAM: protein of unknown function DUF328; KEGG: ajs:Ajs_3291 protein of unknown function DUF328; Belongs to the UPF0246 family.
  
    0.816
Daci_0279
PFAM: 2-nitropropane dioxygenase NPD; KEGG: reu:Reut_B5128 2-nitropropane dioxygenase, NPD.
       0.664
Daci_0281
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_1603 transcriptional regulator, LysR family.
 
     0.650
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.