Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0285KEGG: ppf:Pput_3076 hypothetical protein. (460 aa)    
Predicted Functional Partners:
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
     
  0.900
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
     
  0.900
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
     
  0.900
Daci_0287
TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: bch:Bcen2424_3505 hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family.
 
     0.825
Daci_0286
KEGG: ppf:Pput_3075 hypothetical protein.
       0.815
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
     0.734
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.710
Daci_3305
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase.
  
     0.671
Daci_2519
KEGG: aav:Aave_3010 hypothetical protein.
 
  
 0.638
Daci_1378
PFAM: porin Gram-negative type; KEGG: reu:Reut_B3712 porin, gram-negative type.
  
     0.603
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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