STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0285KEGG: ppf:Pput_3076 hypothetical protein. (460 aa)    
Predicted Functional Partners:
Daci_0287
TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: bch:Bcen2424_3505 hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family.
 
     0.823
Daci_0286
KEGG: ppf:Pput_3075 hypothetical protein.
       0.797
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
     0.734
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.710
Daci_3305
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase.
  
     0.671
Daci_2519
KEGG: aav:Aave_3010 hypothetical protein.
 
  
 0.633
Daci_1378
PFAM: porin Gram-negative type; KEGG: reu:Reut_B3712 porin, gram-negative type.
  
     0.603
Daci_2336
PFAM: regulatory protein LuxR; KEGG: rpb:RPB_1819 transcriptional regulator, LuxR family.
  
     0.600
Daci_4633
KEGG: pna:Pnap_1480 NAD-dependent epimerase/dehydratase.
  
     0.596
Daci_0967
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1.
  
     0.571
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.