STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0287TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: bch:Bcen2424_3505 hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family. (429 aa)    
Predicted Functional Partners:
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
 
     0.823
Daci_0286
KEGG: ppf:Pput_3075 hypothetical protein.
     
 0.688
Daci_5387
PFAM: NUDIX hydrolase; KEGG: aav:Aave_3467 NUDIX hydrolase.
  
  
 0.644
Daci_0288
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bch:Bcen2424_3504 transcriptional regulator, GntR family.
 
     0.612
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
      
 0.530
Daci_2875
PFAM: pyruvate carboxyltransferase; KEGG: aav:Aave_1652 pyruvate carboxyltransferase.
    
 0.522
Daci_2967
PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_3685 pyruvate carboxyltransferase.
    
 0.522
Daci_3137
PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_6280 pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
    
 0.522
Daci_5964
PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3757 pyruvate carboxyltransferase.
    
 0.522
ilvD
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: swi:Swit_1660 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
      
 0.481
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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