STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0301PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0162 hypothetical protein. (243 aa)    
Predicted Functional Partners:
Daci_0302
PFAM: nitrogen regulatory protein P-II; KEGG: pna:Pnap_0120 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
    0.803
Daci_0303
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ajs:Ajs_0164 ammonium transporter.
  
    0.706
Daci_4779
PFAM: SPW repeat; KEGG: pol:Bpro_2330 hypothetical protein.
  
     0.661
Daci_2401
PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3.
  
     0.584
Daci_0475
KEGG: mpt:Mpe_A1625 putative outer membrane cation efflux protein.
  
     0.567
Daci_3001
KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor.
 
     0.498
Daci_4869
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.470
Daci_0029
PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_4065 extracellular ligand-binding receptor.
  
     0.469
Daci_0534
KEGG: ajs:Ajs_3882 hypothetical protein.
  
     0.466
Daci_0304
PFAM: FAD linked oxidase domain protein; KEGG: vei:Veis_3312 FAD linked oxidase domain protein.
       0.462
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.