STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0302PFAM: nitrogen regulatory protein P-II; KEGG: pna:Pnap_0120 nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)    
Predicted Functional Partners:
Daci_0303
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ajs:Ajs_0164 ammonium transporter.
 
 0.992
Daci_2331
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pna:Pnap_0178 ammonium transporter.
 
 0.975
Daci_0301
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0162 hypothetical protein.
  
    0.803
glnD
UTP-GlnB uridylyltransferase, GlnD; KEGG: vei:Veis_3611 metal dependent phosphohydrolase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region.
 
 
 
 0.797
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
 
 
 0.728
Daci_5000
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1191 signal transduction histidine kinase, nitrogen specific, NtrB.
  
 
 0.682
argA
TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; KEGG: ajs:Ajs_2327 amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
   
 
 0.678
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
  
  
 0.626
Daci_0304
PFAM: FAD linked oxidase domain protein; KEGG: vei:Veis_3312 FAD linked oxidase domain protein.
       0.553
Daci_5762
PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfl:PFL_4115 ADP-ribosylglycohydrolase family protein.
   
 
 0.544
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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