Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0303TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ajs:Ajs_0164 ammonium transporter. (457 aa)    
Predicted Functional Partners:
Daci_0302
PFAM: nitrogen regulatory protein P-II; KEGG: pna:Pnap_0120 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.986
Daci_4874
PFAM: nitrogen regulatory protein P-II; KEGG: ajs:Ajs_1762 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.929
Daci_4762
PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_0297 nitrogen regulatory protein P-II.
 
 
 0.812
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
 
  
 0.801
Daci_0301
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0162 hypothetical protein.
  
    0.706
Daci_5000
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1191 signal transduction histidine kinase, nitrogen specific, NtrB.
  
 
 0.654
Daci_5002
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: aav:Aave_1442 glutamine synthetase, type I.
  
  
 0.624
Daci_0304
PFAM: FAD linked oxidase domain protein; KEGG: vei:Veis_3312 FAD linked oxidase domain protein.
   
   0.620
Daci_4004
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: pap:PSPA7_4658 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
    
 0.545
Daci_0305
PFAM: protein of unknown function DUF1275; KEGG: ajs:Ajs_0167 protein of unknown function DUF1275.
       0.510
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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