Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_0310PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0175 major facilitator superfamily MFS_1. (433 aa)    
Predicted Functional Partners:
Daci_4755
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
  
 0.882
Daci_5428
KEGG: ajs:Ajs_0900 hypothetical protein.
  
     0.667
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.640
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   
 0.622
Daci_5681
KEGG: aav:Aave_0933 porin, gram-negative type.
  
    0.608
Daci_6049
PFAM: protein of unknown function DUF1239; KEGG: aav:Aave_4783 protein of unknown function DUF1239.
  
     0.605
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
 
   0.588
Daci_5262
KEGG: aav:Aave_1195 putative transmembrane protein.
  
     0.581
Daci_0514
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
  
     0.580
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.580
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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