Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0324PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3248 transporter, MFS family. (462 aa)    
Predicted Functional Partners:
Daci_0323
KEGG: pen:PSEEN3249 hypothetical protein.
       0.773
Daci_4316
PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5203 drug transporter, putative.
  
     0.773
Daci_2017
PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2785 probable integral membrane efflux protein.
  
   
 0.755
Daci_5152
TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_1536 drug resistance transporter Bcr/CflA subfamily.
  
   
 0.643
Daci_3743
PFAM: secretion protein HlyD family protein; KEGG: eba:ebA3446 putative multidrug resistance protein.
 
 
 0.638
Daci_4248
PFAM: secretion protein HlyD family protein; KEGG: psa:PST_3103 probable multidrug resistance efflux pump.
 
 
 0.620
Daci_0325
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3247 transcriptional regulator, LysR family.
       0.548
Daci_3895
PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC3001 MFS transporter.
  
     0.449
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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