STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0331PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0201 protein of unknown function DUF6, transmembrane. (323 aa)    
Predicted Functional Partners:
Daci_0330
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_0200 cupin 2, conserved barrel domain protein.
 
  
 0.663
Daci_0332
PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_0280 peptidase M48, Ste24p.
  
    0.658
Daci_0941
TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: mfa:Mfla_1103 secretion chaperone CsaA.
  
   0.447
Daci_0329
PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0276 major facilitator superfamily MFS_1.
       0.443
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.