Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0364PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: aav:Aave_0305 glucose-methanol-choline oxidoreductase. (618 aa)    
Predicted Functional Partners:
Daci_3296
PFAM: Ankyrin; KEGG: pap:PSPA7_2741 hypothetical protein.
    
 0.535
Daci_3392
PFAM: Ankyrin; KEGG: aav:Aave_3408 ankyrin.
    
 0.535
Daci_5149
PFAM: Ankyrin; KEGG: bur:Bcep18194_B0772 hypothetical protein.
    
 0.535
Daci_0365
PFAM: protein of unknown function DUF140; KEGG: vei:Veis_0920 protein of unknown function DUF140.
  
    0.508
Daci_0366
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_0307 ABC transporter-related protein.
       0.499
Daci_1434
PFAM: heat shock protein DnaJ domain protein; KEGG: rso:RS00401 hypothetical protein.
    
 0.458
Daci_1514
KEGG: pfl:PFL_4492 hypothetical protein.
    
 0.448
Daci_2499
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: rme:Rmet_2155 cytochrome c, class I.
   
 
 0.448
Daci_2948
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbe:Cbei_2655 TPR repeat-containing protein.
    
 0.448
Daci_4219
KEGG: sma:SAV3034 hypothetical protein.
    
 0.448
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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