Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0369PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family. (72 aa)    
Predicted Functional Partners:
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
 
  
 0.960
Daci_0370
KEGG: ajs:Ajs_0255 hypothetical protein.
  
  
 0.909
Daci_1805
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated.
 
  
 0.891
Daci_2123
KEGG: bbr:BB2045 putative lipoprotein.
  
    0.873
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
 
    0.854
Daci_0888
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: aav:Aave_3866 ferritin, Dps family protein.
  
  
 0.726
Daci_4039
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pol:Bpro_0874 transport-associated.
 
    0.721
Daci_2490
KEGG: ajs:Ajs_1609 hypothetical protein.
  
  
 0.685
Daci_1314
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4145 ABC transporter-related protein.
  
    0.580
Daci_3991
PFAM: protein of unknown function DUF883 ElaB; KEGG: ajs:Ajs_2135 protein of unknown function DUF883, ElaB.
  
  
 0.564
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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