STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0370KEGG: ajs:Ajs_0255 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Daci_0369
PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.879
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
 
  
 0.775
Daci_5707
PFAM: Domain of unknown function DUF1854; KEGG: aav:Aave_3978 hypothetical protein.
  
     0.717
Daci_2401
PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3.
  
     0.699
Daci_5708
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3979 ABC transporter-related protein.
  
     0.679
Daci_4709
KEGG: ypi:YpsIP31758_3075 putative lipoprotein.
   
  
 0.659
Daci_0382
PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein.
  
     0.646
Daci_0526
KEGG: ajs:Ajs_3888 hypothetical protein.
  
    0.614
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.572
Daci_2268
PFAM: PsiF repeat protein; KEGG: ppu:PP_4851 phosphate starvation-inducible protein, PsiF precursor.
  
    0.564
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.