STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0376Hypothetical protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel. (870 aa)    
Predicted Functional Partners:
Daci_0375
KEGG: pol:Bpro_1655 hypothetical protein.
       0.773
Daci_4202
KEGG: hpj:jhp0057 hypothetical protein.
  
 
 0.528
Daci_4199
PFAM: cell divisionFtsK/SpoIIIE; KEGG: hpj:jhp0061 hypothetical protein.
  
 
 
 0.492
Daci_0377
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pna:Pnap_4084 two component transcriptional regulator, LuxR family.
     
 0.482
Daci_1176
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: aav:Aave_4277 conserved repeat domain.
  
     0.464
Daci_0378
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pna:Pnap_4085 integral membrane sensor signal transduction histidine kinase.
       0.447
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.