Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0381PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0268 conserved hypothetical protein 701. (142 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
  
 0.958
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.951
Daci_2783
KEGG: ajs:Ajs_1092 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.927
Daci_1478
KEGG: mca:MCA0115 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
    
 0.916
Daci_5745
KEGG: bvi:Bcep1808_1603 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
     
 0.904
Daci_0380
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: aav:Aave_0327 porphobilinogen synthase; Belongs to the ALAD family.
 
   
 0.806
Daci_0384
KEGG: ajs:Ajs_0271 putative transmembrane protein.
 
     0.788
Daci_0382
PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein.
       0.786
Daci_0383
KEGG: ajs:Ajs_0270 ferredoxin-like protein.
       0.777
Daci_0379
PFAM: Mg2 transporter protein CorA family protein; KEGG: aav:Aave_0326 Mg2+ transporter protein, CorA family protein.
  
    0.638
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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