STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0382PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein. (377 aa)    
Predicted Functional Partners:
Daci_0383
KEGG: ajs:Ajs_0270 ferredoxin-like protein.
       0.842
Daci_0381
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0268 conserved hypothetical protein 701.
       0.784
Daci_2432
KEGG: ajs:Ajs_2788 hypothetical protein.
  
     0.767
Daci_0720
KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein.
 
     0.757
Daci_4869
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.742
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
 
     0.737
Daci_0384
KEGG: ajs:Ajs_0271 putative transmembrane protein.
       0.703
Daci_5459
KEGG: aav:Aave_3642 hypothetical protein.
  
     0.700
Daci_1124
KEGG: ajs:Ajs_0447 hypothetical protein.
  
     0.691
Daci_0847
KEGG: aav:Aave_4654 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.689
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.