Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0426KEGG: aav:Aave_0383 alpha/beta hydrolase fold. (328 aa)    
Predicted Functional Partners:
Daci_0427
KEGG: pna:Pnap_0262 hypothetical protein.
       0.829
Daci_0425
PFAM: LemA family protein; KEGG: aav:Aave_0381 LemA family protein.
       0.536
Daci_0424
PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 protein of unknown function DUF477.
       0.476
Daci_0423
PFAM: protein of unknown function DUF477; KEGG: aav:Aave_0379 protein of unknown function DUF477.
       0.470
Daci_5879
KEGG: cvi:CV_3228 hypothetical protein.
 
    0.427
Daci_5369
PFAM: fatty acid desaturase; KEGG: ajs:Ajs_3386 fatty acid desaturase.
  
   
 0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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