STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0438TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: rme:Rmet_1550 type II secretion system protein E. (353 aa)    
Predicted Functional Partners:
Daci_0437
PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC.
 
   
 0.946
Daci_0436
KEGG: rme:Rmet_1552 putative conjugal transfer TrbD transmembrane protein.
 
   
 0.944
Daci_0440
PFAM: TRAG family protein; KEGG: rme:Rmet_1548 TraG protein.
 
   
 0.942
Daci_0435
SMART: AAA ATPase; KEGG: pap:PSPA7_3703 ATPase.
 
   
 0.939
Daci_0432
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pap:PSPA7_3700 conjugal transfer protein TrbL.
 
   
 0.930
Daci_0434
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pau:PA14_30900 TrbJ-like protein.
 
   
 0.927
Daci_0439
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
 
     0.927
Daci_0430
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein.
 
   
 0.920
Daci_0431
PFAM: Conjugal transfer protein; KEGG: ajs:Ajs_2904 conjugal transfer protein.
 
   
 0.920
Daci_0429
PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1559 conjugation TrbI-like protein.
 
   
 0.918
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.