STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0454KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein. (195 aa)    
Predicted Functional Partners:
Daci_0456
KEGG: aav:Aave_0688 hypothetical protein.
 
     0.950
Daci_0455
KEGG: rme:Rmet_1487 hypothetical protein.
 
     0.949
Daci_0457
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase.
 
     0.923
Daci_0458
KEGG: ajs:Ajs_2933 conserved hypothetical replication initiator and transcription repressor protein.
 
     0.866
Daci_0453
KEGG: rme:Rmet_1489 hypothetical protein.
 
     0.861
Daci_0459
KEGG: ajs:Ajs_2651 hypothetical protein.
 
     0.816
Daci_2698
PFAM: Conjugal transfer protein TrbC; KEGG: ajs:Ajs_2910 conjugal transfer protein TrbC.
 
   
 0.798
Daci_0437
PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC.
 
   
 0.797
Daci_0429
PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1559 conjugation TrbI-like protein.
 
   
 0.794
Daci_2690
PFAM: conjugation TrbI family protein; KEGG: pau:PA14_30850 TrbI-like protein.
 
   
 0.794
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.