Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_0456KEGG: aav:Aave_0688 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Daci_0455
KEGG: rme:Rmet_1487 hypothetical protein.
 
     0.950
Daci_0454
KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein.
 
     0.949
Daci_0457
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase.
 
     0.946
Daci_0458
KEGG: ajs:Ajs_2933 conserved hypothetical replication initiator and transcription repressor protein.
 
     0.870
Daci_0453
KEGG: rme:Rmet_1489 hypothetical protein.
 
     0.864
Daci_0459
KEGG: ajs:Ajs_2651 hypothetical protein.
 
     0.832
Daci_2722
KEGG: rme:Rmet_3025 hypothetical protein.
 
     0.810
Daci_0460
KEGG: rme:Rmet_1482 putative lipoprotein.
 
     0.808
Daci_2718
KEGG: rme:Rmet_3021 hypothetical protein.
 
     0.791
Daci_2716
KEGG: pau:PA14_31070 hypothetical protein.
 
     0.789
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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