STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0457PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase. (212 aa)    
Predicted Functional Partners:
Daci_0456
KEGG: aav:Aave_0688 hypothetical protein.
 
     0.947
Daci_0455
KEGG: rme:Rmet_1487 hypothetical protein.
 
     0.938
Daci_0454
KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein.
 
     0.923
Daci_0458
KEGG: ajs:Ajs_2933 conserved hypothetical replication initiator and transcription repressor protein.
   
 0.873
Daci_2733
PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease.
 
 
 0.860
Daci_0467
PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease.
 
 
 0.858
Daci_0453
KEGG: rme:Rmet_1489 hypothetical protein.
 
     0.813
Daci_0051
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0056 ParB-like partition protein; Belongs to the ParB family.
 
 
 0.802
Daci_2721
KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein.
   
 0.792
Daci_2719
KEGG: rme:Rmet_3022 hypothetical protein.
 
     0.779
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.