STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0461Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_1481 transcriptional regulator, XRE family. (97 aa)    
Predicted Functional Partners:
Daci_0460
KEGG: rme:Rmet_1482 putative lipoprotein.
 
     0.588
Daci_0459
KEGG: ajs:Ajs_2651 hypothetical protein.
 
     0.575
Daci_5790
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pna:Pnap_0540 helix-turn-helix domain protein.
 
     0.551
Daci_2727
KEGG: rme:Rmet_3026 hypothetical protein.
 
     0.443
Daci_4211
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: xfa:XF1719 hypothetical protein.
  
     0.418
Daci_0456
KEGG: aav:Aave_0688 hypothetical protein.
 
     0.413
Daci_0282
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bam:Bamb_4540 HipA domain protein.
   
 
 0.403
Daci_0903
PFAM: HipA domain protein; KEGG: mxa:MXAN_0015 hypothetical protein.
   
 
 0.403
Daci_2578
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like.
   
 
 0.403
Daci_2612
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like.
   
 
 0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.