STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0464TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pde:Pden_3353 cation diffusion facilitator family transporter. (317 aa)    
Predicted Functional Partners:
Daci_0465
PFAM: protein of unknown function DUF156; KEGG: pde:Pden_3352 protein of unknown function DUF156.
 
  
 0.805
Daci_0463
PFAM: protein of unknown function DUF1232; KEGG: bbr:BB1021 hypothetical protein.
       0.780
Daci_0462
PFAM: protein of unknown function DUF736; KEGG: pau:PA14_31180 hypothetical protein.
 
     0.626
Daci_4424
PFAM: protein of unknown function DUF156; KEGG: aha:AHA_0625 hypothetical protein.
 
  
 0.529
merA
Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
  
 0.423
Daci_3069
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: bch:Bcen2424_6244 cytochrome c biogenesis protein, transmembrane region.
    
 0.420
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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