Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0467PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease. (687 aa)    
Predicted Functional Partners:
Daci_0468
PFAM: protein of unknown function DUF932; KEGG: ajs:Ajs_2944 protein of unknown function DUF932.
 
    0.894
Daci_0457
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase.
 
 
 0.860
Daci_2720
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase.
 
 
 0.860
Daci_0462
PFAM: protein of unknown function DUF736; KEGG: pau:PA14_31180 hypothetical protein.
 
     0.811
Daci_2717
KEGG: rme:Rmet_3020 putative conjugal transfer TRAF transmembrane protein.
 
   
 0.773
Daci_0454
KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein.
 
   
 0.772
Daci_2730
PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_3029 protein of unknown function DUF736.
 
     0.765
Daci_0455
KEGG: rme:Rmet_1487 hypothetical protein.
  
     0.761
Daci_0453
KEGG: rme:Rmet_1489 hypothetical protein.
  
   
 0.758
Daci_2718
KEGG: rme:Rmet_3021 hypothetical protein.
  
     0.757
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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