STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0498PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I. (180 aa)    
Predicted Functional Partners:
Daci_5501
PFAM: cytochrome c1; KEGG: aav:Aave_3694 cytochrome c1.
 
  
 0.769
Daci_5589
PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I.
 
   
 0.745
Daci_1682
KEGG: ajs:Ajs_3529 hypothetical protein.
 
   
 0.713
Daci_1674
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.709
Daci_2778
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.689
Daci_4065
PFAM: cytochrome oxidase assembly; KEGG: aav:Aave_3900 cytochrome oxidase assembly.
 
     0.668
Daci_1662
PFAM: cytochrome c class I; KEGG: ajs:Ajs_3555 cytochrome c, class I.
 
   
 0.662
Daci_0450
TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_1235 copper-resistance protein, CopA family.
    
 
 0.644
Daci_2910
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_2600 multicopper oxidase, type 3.
    
 
 0.644
Daci_2985
KEGG: aav:Aave_3388 cytochrome c553-like protein.
 
   
 0.619
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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