STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0516PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: aav:Aave_4525 two component transcriptional regulator, fis family. (223 aa)    
Predicted Functional Partners:
Daci_0515
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4526 multi-sensor signal transduction histidine kinase.
 
 
 0.954
Daci_0514
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
 
     0.921
Daci_1873
PFAM: response regulator receiver; KEGG: aav:Aave_2238 response regulator receiver protein.
  
 
 
 0.690
Daci_2755
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo0975 probable two-component response regulatory protein.
  
 
 
 0.682
Daci_5416
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_4276 two component transcriptional regulator, winged helix family.
  
 
 
 0.663
Daci_0876
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_3999 two component transcriptional regulator, winged helix family.
  
 
 
 0.656
Daci_3802
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_1450 two component transcriptional regulator, winged helix family.
  
 
 
 0.656
Daci_0738
PFAM: response regulator receiver; KEGG: aav:Aave_2238 response regulator receiver protein.
  
 
 
 0.648
Daci_2366
Histidine kinase; KEGG: pap:PSPA7_4410 virulence sensor protein BvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3.
 
 
 0.645
Daci_5423
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0237 two component transcriptional regulator, winged helix family.
  
 
 
 0.625
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.