STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0517PFAM: Cupin 2 conserved barrel domain protein; KEGG: mms:mma_3216 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Daci_3669
KEGG: pol:Bpro_4259 putative lipoprotein.
  
     0.539
Daci_0936
KEGG: bbr:BB1856 putative integral membrane protein.
 
 
   0.462
Daci_5063
KEGG: aav:Aave_1383 hypothetical protein.
  
     0.455
Daci_0518
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_1866 transcriptional regulator, BadM/Rrf2 family.
  
    0.448
Daci_3781
KEGG: rfr:Rfer_2260 hypothetical protein.
  
 
   0.437
Daci_1631
PFAM: Terminase; KEGG: bbr:BB1692 terminase.
  
     0.434
Daci_0519
KEGG: net:Neut_0622 protein of unknown function DUF474.
       0.419
Daci_0111
PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase.
  
     0.418
Daci_2830
PFAM: SlyX family protein; KEGG: ajs:Ajs_3168 SlyX family protein.
  
     0.414
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.