Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0535Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: aav:Aave_4499 transcriptional regulator, XRE family. (246 aa)    
Predicted Functional Partners:
Daci_0537
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase.
 
     0.673
Daci_0536
KEGG: vei:Veis_1658 hypothetical protein.
 
     0.638
Daci_0541
KEGG: aav:Aave_4488 hypothetical protein.
 
     0.618
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
 
     0.600
Daci_1975
KEGG: pna:Pnap_3592 hypothetical protein.
  
     0.562
Daci_5195
KEGG: ajs:Ajs_3186 hypothetical protein.
  
     0.561
Daci_5694
PFAM: General secretion pathway L; KEGG: aav:Aave_0920 hypothetical protein.
  
     0.504
Daci_4302
KEGG: pol:Bpro_1821 putative transmembrane protein.
  
     0.491
Daci_1979
KEGG: pna:Pnap_3593 hypothetical protein.
  
     0.470
Daci_0534
KEGG: ajs:Ajs_3882 hypothetical protein.
       0.469
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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