STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0537PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase. (654 aa)    
Predicted Functional Partners:
Daci_0946
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase.
 
 
 0.878
Daci_2771
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_1080 AMP-dependent synthetase and ligase.
  
 
 0.865
Daci_4826
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5438 AMP-dependent synthetase and ligase.
  
 
 0.816
Daci_0536
KEGG: vei:Veis_1658 hypothetical protein.
       0.798
Daci_1265
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase.
 
 
 0.714
Daci_0535
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: aav:Aave_4499 transcriptional regulator, XRE family.
 
     0.674
Daci_5975
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3764 AMP-dependent synthetase and ligase.
  
 
 0.673
Daci_1072
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_1683 AMP-dependent synthetase and ligase.
  
 
 0.652
Daci_4468
PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB4413 probable acid-coenzyme A ligase.
    
 0.618
Daci_4325
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1264 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.585
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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