STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0539PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein. (157 aa)    
Predicted Functional Partners:
Daci_0541
KEGG: aav:Aave_4488 hypothetical protein.
 
     0.889
Daci_3364
PFAM: protein of unknown function DUF1566; KEGG: ajs:Ajs_1701 protein of unknown function DUF1566.
  
     0.715
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.697
Daci_0540
KEGG: ajs:Ajs_3874 hypothetical protein.
       0.693
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
  
     0.669
Daci_0542
KEGG: ajs:Ajs_3872 hypothetical protein.
 
     0.645
Daci_4546
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pna:Pnap_2042 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
     0.625
Daci_4687
PFAM: terminase GpA; KEGG: ssn:SSON_2430 putative DNA packaging protein of prophage.
  
     0.620
Daci_0535
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: aav:Aave_4499 transcriptional regulator, XRE family.
 
     0.599
Daci_1979
KEGG: pna:Pnap_3593 hypothetical protein.
  
     0.599
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.