STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0541KEGG: aav:Aave_4488 hypothetical protein. (272 aa)    
Predicted Functional Partners:
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
 
     0.889
Daci_0540
KEGG: ajs:Ajs_3874 hypothetical protein.
       0.849
Daci_5694
PFAM: General secretion pathway L; KEGG: aav:Aave_0920 hypothetical protein.
  
     0.690
Daci_0542
KEGG: ajs:Ajs_3872 hypothetical protein.
 
     0.683
Daci_0535
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: aav:Aave_4499 transcriptional regulator, XRE family.
 
     0.622
Daci_5690
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_3522 general secretion pathway protein H.
  
     0.615
Daci_5696
KEGG: vei:Veis_3528 putative general secretory pathway N transmembrane protein.
  
     0.614
Daci_5691
PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I.
  
     0.604
Daci_5692
KEGG: vei:Veis_3524 hypothetical protein.
  
     0.598
Daci_4302
KEGG: pol:Bpro_1821 putative transmembrane protein.
  
     0.596
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.