STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_05604-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; KEGG: rpb:RPB_0468 hypothetical protein. (539 aa)    
Predicted Functional Partners:
Daci_0563
PFAM: YdjC family protein; KEGG: aav:Aave_0597 hypothetical protein.
 
  
 0.893
Daci_0561
PFAM: glycosyl transferase family 2; KEGG: aav:Aave_0599 glycosyl transferase, family 2.
 
  
 0.868
Daci_0562
PFAM: GtrA family protein; KEGG: aav:Aave_0598 GtrA family protein.
 
   
 0.856
Daci_1933
KEGG: bbr:BB3510 phage-related hypothetical protein.
 
     0.652
Daci_2265
Membrane protein-like protein; KEGG: mlo:mlr2123 hypothetical protein.
  
     0.620
Daci_0265
KEGG: xft:PD0997 hypothetical protein.
  
     0.576
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
  
     0.576
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.576
Daci_1318
PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2.
 
  
 0.531
Daci_0559
PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier.
  
    0.527
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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