Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Daci_0589PFAM: Creatininase; KEGG: ajs:Ajs_3852 creatininase. (287 aa)    
Predicted Functional Partners:
Daci_4995
PFAM: Amidohydrolase 3; KEGG: pna:Pnap_4007 N-isopropylammelide isopropylaminohydrolase.
    
 0.915
Daci_2943
KEGG: mms:mma_2623 bacteriophage N4 adsorption protein B.
  
  
 0.650
Daci_5874
PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2029 putative glycosyl transferase, family 2.
  
  
 0.650
Daci_0587
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: aav:Aave_4456 cytochrome c biogenesis protein, transmembrane region.
       0.639
Daci_0588
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5616 uncharacterized protein UPF0065.
       0.636
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.475
Daci_1452
PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: aav:Aave_0793 beta-lactamase domain protein.
  
     0.436
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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